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Seminar✓ Recording AvailableOpen Source

Towards open meta-research in neuroimaging

Kendra Oudyk

Dr.

ORIGAMI - Neural data science - https://neurodatascience.github.io/

Schedule
Monday, December 9, 2024

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Schedule

Sunday, December 8, 2024

11:00 PM Canada/Eastern

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Host: Open Source Neuro

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Recording provided by the organiser.

Event Information

Domain

Open Source

Original Event

View source

Host

Open Source Neuro

Duration

70 minutes

Abstract

When meta-research (research on research) makes an observation or points out a problem (such as a flaw in methodology), the project should be repeated later to determine whether the problem remains. For this we need meta-research that is reproducible and updatable, or living meta-research. In this talk, we introduce the concept of living meta-research, examine prequels to this idea, and point towards standards and technologies that could assist researchers in doing living meta-research. We introduce technologies like natural language processing, which can help with automation of meta-research, which in turn will make the research easier to reproduce/update. Further, we showcase our open-source litmining ecosystem, which includes pubget (for downloading full-text journal articles), labelbuddy (for manually extracting information), and pubextract (for automatically extracting information). With these tools, you can simplify the tedious data collection and information extraction steps in meta-research, and then focus on analyzing the text. We will then describe some living meta-research projects to illustrate the use of these tools. For example, we’ll show how we used GPT along with our tools to extract information about study participants. Essentially, this talk will introduce you to the concept of meta-research, some tools for doing meta-research, and some examples. Particularly, we want you to take away the fact that there are many interesting open questions in meta-research, and you can easily learn the tools to answer them. Check out our tools at https://litmining.github.io/

Topics

Computational NeuroscienceData AnalysisData Repositoriesautomationdata collectioninformation extractionlitminingliving meta-researchmeta-researchnatural language processingneuroimagingreproducibilitysoftware

About the Speaker

Kendra Oudyk

Dr.

ORIGAMI - Neural data science - https://neurodatascience.github.io/

Contact & Resources

Personal Website

open-neuroscience.com/en/post/towards_open_meta_research_in_neuroimaging/

@koudyk_

Follow on Twitter/X

twitter.com/koudyk_

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